H. Realpe,  E. Peretz, N. Shamir, M. H. Mintz, R. Z. Shneck and Y. Manassen.  Islands as Nanometric Probes of Strain Distribution in Heterogeneous Surfaces
Phys. Rev. Lett.  104  056102 (2010).

H. Realpe, N. Shamir; Y. Manassen and M.H Mintz,
“The dynamic nature of hydrogen in the α and β phases in the Gd(0001)/W(110) system: STM observations”
J. Alloys and Compounds,  473, 521 (2009)

 V. Mugnaini, M. Fabrizioli , I. Ratera, M. Mannini , A. Caneschi, D. Gatteschi, Y. Manassen  and J. Veciana 
“Towards the Detection of Single Polychlorotriphenylmethyl Radical Derivatives by means of Electron Spin Noise STM”

Solid State
Science, 11,  956  (2009)

R. Dana, I. Kiriuschev,  Phong Dinh Tran, Pascal Doppelt and Y. Manassen
“Towards a Dual-Tip STM applications in mesoscopic electron Transport”
 Isr. J. Chem. 48, 87 (2008)

T. Komeda and Y. Manassen,
“Distribution of frequencies of a single precessing spin detected by scanning tunneling microscope”

Appl. Phys. Lett.
92 212506 (2008).

R. Dana  and Y. Manassen,
“Mesoscopic mismatch as a driving force for modified morphology above percolation”
EuroPhys. Lett. 79, 16001 (2007)

M. Mannini, P. Messina, L. Sorace, L. Gorini, M. Fabrizioli, A. Caneschi, Y. Manassen, P. Sigalotti, P. Pittana, D. Gatteschi, 
“Addressing individual paramagnetic molecules through ESN-STM”
 Inorganica Chimica Acta  360 3837 (2007)

P. Messina,  M. Mannini, A Caneschi, D. Gatteschi, L. Sorace, P. Sigalotti, C. Sandrin,    S. Prato and Y. Manassen
  Spin noise fluctuations from paramagnetic molecular adsorbates on surfaces”

J. Appl. Phys
. 101, 053916 (2007).

H. Realpe, N. Shamir, M. H. Mintz and Y. Manassen
“Morphology changes due to AC induced electromigration in Gd islands on W(110)”
Surf. Sci.  601, 1177 (2007).

H. Realpe, N. Shamir, M. H. Mintz and . Y. Manassen,
“STM imaging of electrically floating islands”
Surf. Sci.  600, 2795 (2006).

A. V  Balatsky, J. Franson, D. Muzyrsky and Y Manassen 
Nuclear Spin Noise and STM Noise Spectroscopy”
Phys. Rev. B  73 184429 (2006).

Y.Manassen, A.V. Balatsky,
"1/f Spin Noise and a Single Spin Detection with STM" 
Israel Journal of Chemistry  44  401 (2004

Z. Nussinov, Jian-Xin Zhu, A.V. Balatsky, M.F. Crommie and Y. Manassen Proc.
"Single Spin detection and noise spectroscopy"
 SPIE Int. Soc. Opt. Eng. 5472, 116 (2004)

Y. Manassen, H. Realpe, R. Shneck, D. Barlam, and A. Brokman,
“Out-of-plane STM displacement measurements an evaluation of elastic fields in Iron silicide islands on silicon”
Phys. Rev. B 68, 075412 (2003)

N. Ramesh Rao , Z. Olami , Y. Manassen  and Rami Dana
”Fractalization of sililcon islands at a coverage close to 0.5 monolayer “ 
Surf. Sci. 520, 35 (2002)

A. V. Balatsky, Y. Manassen and R. Salem
“ESR-STM of a single precessing spin: Detection of Exchange Based Spin Noise”
Phys. Rev. B 66, 195416   (2002)

V .Balatsky, Y. Manassen and R. Salem
“Exchange Based Noise Spectroscopy of a Single Precessing Spin with Scanning Tunneling Microscopy”
Phil. Mag. B 82, 1291 (2002)

Y. Manassen, I. Mukhopadhyay and N. Ramesh Rao
"ESR-STM on Iron Atoms in Silicon"
Phys. Rev. B 61, 16223 (2000) . [pdf]
S. Richter, Y. Manassen and D. Cahen,
Bulk Changes in Semiconductors Using Scanning Probe Microscopy: nm size fabricated structures"
Phys. Rev. B 59, 10877 (1999). [pdf]
Y. Manassen, N. Ramesh Rao, I. Mukhopadhyay, E. Ter - Ovanesyan and Z. Olami,
"Anomalous Coarsening Process of Voids and Steps on a Si(111)7x7 surface"
Phys. Rev. E 59, 2664 (1999) .[pdf]
V. Lyakhovitskaya, S. Richter, F. Frolow, L. Kaplan, Y. Manassen, K. Gartsman and D. Cahen,
"Growth of Single Copper Indium Diselenide Crystals by the Travelling Heater Method and their Charaterization"
J. Cryst. Growth 197, 177 (1999).

S. Richter, D. Cahen, S. R. Cohen, K. Gartsman, V. Lyakhovitskaya and Y. Manassen,
"Fabrication of sub-mu m bipolar transistor structures by SPM"
Appl. Phys. Lett. 73, 1868 (1998). [pdf] 
Y. Manassen,  "Microscopy"   The Hebrew Encyclopedia.
Y. Manassen,
"STM on Physisorbed Chemical Groups of Individual Molecules"
Annals NY Acad. Sci.
852, 277 (1998).  

V. Lyakhovitskaya, S. Richter Y. Manassen, and D. Cahen,
"Growth and Characterization of Twin - free Copper Indium Diselenide Crystals by the Traveling heater Method"
Inst. Phys. Conf. Ser. 152 Sec. A 103 (1998).

S. Richter, V. Lyakhovitskaya S. R. Cohen, K. Gartsman, D. Cahen and Y. Manassen,
"Submicron Semiconductor Device Structure in Copper Indium Diselenide"
Inst. Phys. Conf. Proc. Ser. 152, Sec H, 943 (1998).

Y. Manassen, E. Ter - Ovanesyan and D. Shachal,
"From 10 Bilion spins to a single spin"
 Foundations of Modern EPR, edited by S. S. Eaton, G. R. Eaton and K. Salikhov, World Scientific Publishing (1998).

D. Shachal and Y. Manassen,
"Adsorption of 1,13 Tetradecadiene on Si(111)7x7 Studied by STM: a Hint for Electrostatic Interactions Between the Aliphatic Chain and the Surface"
Appl. Phys. A 66, S1229 (1998).

D. Shachal and Y. Manassen,
"Through Bond tunneling in an Immobilized Alkyl Chain on Si(111)7x7 Studied by STM"
Chem. Phys. Lett. 271, 107 (1997).

D. Shachal and Y. Manassen,
"The Adsorption Geometries of 1,9 Decadiene on Si(111)7x7 Studied by STM"
J. Vac. Sci. Technol. B 15, 1310 (1997).
E. Ter - Ovanesyan, Y.Manassen, N. Ramesh Rao and Z. Olami,
"Diffusional Attractions Between Voids on a Si(111)7x7 Surface"
J. Vac. Sci. Technol. B, 15, 1317 (1997).[pdf]

A. Pomyalov and Y. Manassen,
"Local Electric Field Effects in STM of Single - Atom Adsorption on a Si(001) Surface"
Surf. Sci. 382, 275 (1997).

Y. Manassen,
"Real Time Response and Phase - Sensitive Detection to Demonstrate the Validity of ESR - STM Results"
J. Magn. Reson. 126, 133 (1997).

D. Shachal, Y. Manassen, and E. Ter-Ovanesyan
"Role of chain length on the surface chemistry of dienes studied by scanning tunneling microscopy"
Phys. Rev. B  55  15,  (1997)  [pdf]
L. Chernyak, V. Lyakhovitzkaya, S. Richter, A. Jakubowicz, Y. Manassen, S. R. Cohen and D. Cahen
"Electronic Effects of Ion Mobility in Semiconductors: Mixed Electronic - Ionic Behaviour and Device creation in Si:Li"
J. Appl. Phys
. 80, 2749 (1996). [pdf]

Y. Manassen
"Device Applications of Scanning Probe Microscopy"
Phys. Low Dim. Sol. 1/2 1 (1996).

Y. Golan, E. Ter Ovanesyan, Y. Manassen, L. Margulis, G. Hodes, I. Rubinstein and J. L. Hutchinson,
"Electrodeposited Quantum Dots Epitaxial Short - Range Order in Amorphous Semiconductor Nanostructures"
Surf. Sci. 350, 277 (1996).

E. Ter - Ovanesyan, Y. Manassen and D. Shachal,
"Solid Phase Epitaxy of Thin Silicon Film on Si(111) Surface Studied by STM"
Isr. J. Chem. 36, 45 (1996).

Y. Manassen, E. Ter - Ovanesyan and D. Shachal,
"STM Methods for Detecting ESR of a Single Spin Center"
in Bioradicals Detected with ESR Spectroscopy Edited by H. Ohya Nishiguchi and L. Packer, Birkhauser Verlag Basel/ Switzerland (1995).

E. G. Bithell, J. L. Hutchinson, Y. Golan, E. Ter - Ovanesyan, Y. Manassen, L. Margulis, G. Hodes and I. Rubinstein,
"HREM assessment of Short Range Order in CdSe Quantum Dots",
Inst. Phys. Conf. Ser. 147, Section 3 79-82 (1995).

E. Ter-Ovanesyan , D. Shachal , And Y. Manassen
"Ordering Of Amorphus Silicon During Solid Phase Epitaxy Studied With Use Of Scanning Tunneling Microscopy "
Phys. Rev. B  50  11,  (1994)  [pdf]

Y. Manassen, 
"Scanning Probe Microscopy in Magnetic Resonance"
Adv. Mater. 6, 401 (1994).
S. Richter and Y. Manassen,
"Aspects of Molecular Imaging with a Scanning Tunneling Microscope"
J. Phys. Chem. 98, 2941 (1994).

Y. Manassen , E. Ter-Ovanesyan , D. Shachal , And S. Richter
"Electron-Spin Resonance - Scanning Tunneling Microscopy  Experiments on Thermaly Oxidized Si(111) "
Phys. Rev. B  48  7, (1993)  [pdf]

D. Shachal And Y. Manassen
"Mechanism Of Electron-Spin Resonance Studied With Use Of Scanning Tunneling Microscopy "
Phys. Rev. B  46  8, (1992)  [pdf]

D. Shachal And Y. Manassen
"Spin-Orbit-Coupling Mechanism For Scanning Tunneling Microscopy Observation Of Individual Paramagnetic Spins "
Phys. Rev. B  44  20,  (1991)  [pdf]

Y. Manassen ,  R. J. Hamers ,  J. E. Demuth And A. J. Castellano, Jr
"Direct Observation of The Precession of Individual Paramagnetic Spins On Oxidized Silicon Surface "
Phys. Rev. lett  62 , 21 (1989) [pdf]